Grand Staircase-Escalante National Monument is preparing an Environmental Impact Statement on their grazing plan. Previously there was a scoping period in which members of the public were invited to submit comments. A major theme in the comments was biocrusts. In response to this, the Monument is organizing a moderated public forum in which a panel will answer questions submitted by the general public. The event will be at the Kanab, Utah city library (9:00 am - 4:00 pm Mountain Standard Time), and will also be broadcast live online. I have agreed to join the panel, as have Jayne Belnap, Janis Boettinger, Fee Busby and Kim Anderson.
Official News Release
Lake Powell News Article (this link loads faster)
Agenda
Watch Live online here
Pages
A networking resource devoted to biological soil crusts and the researchers who study them. We will provide a means for international scientists to communicate, share their research, share important news and announcements, ask questions and find collaborators. We will also provide a space for informal writing on research, opinion, and ideas (now seeking posters!).
Showing posts with label Utah. Show all posts
Showing posts with label Utah. Show all posts
Friday, August 1, 2014
Biological soil crust science forum, August 6, Kanab, Utah
Wednesday, July 30, 2014
Post-doc job announcement in Barger Lab, University of Colorado Boulder
Post-Doctoral Research Associate – University of Colorado Boulder – Department of Ecology and Evolutionary Biology
A two-year post-doctoral research associate position will be available in Nichole Barger’s lab at the University of Colorado – Boulder. The successful candidate will work on a newly funded project to examine plant and soil responses to biological soil crust restoration. The post-doctoral research associate will oversee field research at Hill Air Force Base in the Great Basin and Jornada Experimental Range in the Chihuahuan Desert. This work will occur in close collaboration with an interdisciplinary team of scientists who specialize in soil microbiology (Ferran Garcia-Pichel, Arizona State University), soil ecology (Matthew Bowker, Northern Arizona University and Jayne Belnap USGS), ecosystem ecology (Sasha Reed, USG) and soil science (Mike Duniway, USGS). We are seeking a highly motivated and energetic applicant with specialties in ecosystem ecology/biogeochemistry, plant ecology, or soil ecology. Expertise in aridland ecology is a plus. The start date is flexible ranging from December 2014 through February 2015. If you are interested please send a brief letter of interest and a current CV to Nichole Barger at nichole.barger@colorado.edu.
A two-year post-doctoral research associate position will be available in Nichole Barger’s lab at the University of Colorado – Boulder. The successful candidate will work on a newly funded project to examine plant and soil responses to biological soil crust restoration. The post-doctoral research associate will oversee field research at Hill Air Force Base in the Great Basin and Jornada Experimental Range in the Chihuahuan Desert. This work will occur in close collaboration with an interdisciplinary team of scientists who specialize in soil microbiology (Ferran Garcia-Pichel, Arizona State University), soil ecology (Matthew Bowker, Northern Arizona University and Jayne Belnap USGS), ecosystem ecology (Sasha Reed, USG) and soil science (Mike Duniway, USGS). We are seeking a highly motivated and energetic applicant with specialties in ecosystem ecology/biogeochemistry, plant ecology, or soil ecology. Expertise in aridland ecology is a plus. The start date is flexible ranging from December 2014 through February 2015. If you are interested please send a brief letter of interest and a current CV to Nichole Barger at nichole.barger@colorado.edu.
Wednesday, January 15, 2014
Colorado Arts & Sciences Magazine: Can biological soil crust communities be restored?
Nice, recent article on our biocrust restoration project on military lands (led by Nichole Barger with a team consisting of Ferran Garcia-Pichel, Ana Giraldo, Sergio Velasco, myself, Anita Antoninka, Jayne Belnap, Sasha Reed, & Mike Duniway) here.
Sunday, January 5, 2014
Way Overdue: A First-Ever Grazing Plan for Grand Staircase-Escalante National Monument
Way Overdue: A First-Ever Grazing Plan for Grand Staircase-Escalante National Monument
The comment period on the Grand Staircase-Escalante NM Grazing Plan is open.
The comment period on the Grand Staircase-Escalante NM Grazing Plan is open.
Tuesday, October 22, 2013
Ecological thresholds report
Not exactly biocrust-focused, but biocrusts turn up repeatedly in this report.
Bowker, M.A., Miller, M.E., Belote, R.T., and Garman, S.L., 2013, Ecological thresholds as a basis for defining management triggers for National Park Service vital signs—Case studies for dryland ecosystems: U.S. Geological Survey Open-File Report 2013–1244, 94 p.,
http://pubs.usgs.gov/of/2013/1244/
Bowker, M.A., Miller, M.E., Belote, R.T., and Garman, S.L., 2013, Ecological thresholds as a basis for defining management triggers for National Park Service vital signs—Case studies for dryland ecosystems: U.S. Geological Survey Open-File Report 2013–1244, 94 p.,
http://pubs.usgs.gov/of/2013/1244/
Introduction
Threshold concepts are used in research and management of ecological systems to describe and interpret abrupt and persistent reorganization of ecosystem properties (Walker and Meyers, 2004; Groffman and others, 2006). Abrupt change, referred to as a threshold crossing, and the progression of reorganization can be triggered by one or more interactive disturbances such as land-use activities and climatic events (Paine and others, 1998). Threshold crossings occur when feedback mechanisms that typically absorb forces of change are replaced with those that promote development of alternative equilibria or states (Suding and others, 2004; Walker and Meyers, 2004; Briske and others, 2008). The alternative states that emerge from a threshold crossing vary and often exhibit reduced ecological integrity and value in terms of management goals relative to the original or reference system. Alternative stable states with some limited residual properties of the original system may develop along the progression after a crossing; an eventual outcome may be the complete loss of pre-threshold properties of the original ecosystem. Reverting to the more desirable reference state through ecological restoration becomes increasingly difficult and expensive along the progression gradient and may eventually become impossible. Ecological threshold concepts have been applied as a heuristic framework and to aid in the management of rangelands (Bestelmeyer, 2006; Briske and others, 2006, 2008), aquatic (Scheffer and others, 1993; Rapport and Whitford 1999), riparian (Stringham and others, 2001; Scott and others, 2005), and forested ecosystems (Allen and others, 2002; Digiovinazzo and others, 2010). These concepts are also topical in ecological restoration (Hobbs and Norton 1996; Whisenant 1999; Suding and others, 2004; King and Hobbs, 2006) and ecosystem sustainability (Herrick, 2000; Chapin and others, 1996; Davenport and others, 1998).
Achieving conservation management goals requires the protection of resources within the range of desired conditions (Cook and others, 2010). The goal of conservation management for natural resources in the U.S. National Park System is to maintain native species and habitat unimpaired for the enjoyment of future generations. Achieving this goal requires, in part, early detection of system change and timely implementation of remediation. The recent National Park Service Inventory and Monitoring program (NPS I&M) was established to provide early warning of declining ecosystem conditions relative to a desired native or reference system (Fancy and others, 2009). To be an effective tool for resource protection, monitoring must be designed to alert managers of impending thresholds so that preventive actions can be taken. This requires an understanding of the ecosystem attributes and processes associated with threshold-type behavior; how these attributes and processes become degraded; and how risks of degradation vary among ecosystems and in relation to environmental factors such as soil properties, climatic conditions, and exposure to stressors. In general, the utility of the threshold concept for long-term monitoring depends on the ability of scientists and managers to detect, predict, and prevent the occurrence of threshold crossings associated with persistent, undesirable shifts among ecosystem states (Briske and others, 2006). Because of the scientific challenges associated with understanding these factors, the application of threshold concepts to monitoring designs has been very limited to date (Groffman and others, 2006). As a case in point, the monitoring efforts across the 32 NPS I&M networks were largely designed with the knowledge that they would not be used to their full potential until the development of a systematic method for understanding threshold dynamics and methods for estimating key attributes of threshold crossings.
This report describes and demonstrates a generalized approach that we implemented to formalize understanding and estimating of threshold dynamics for terrestrial dryland ecosystems in national parks of the Colorado Plateau. We provide a structured approach to identify and describe degradation processes associated with threshold behavior and to estimate indicator levels that characterize the point at which a threshold crossing has occurred or is imminent (tipping points) or points where investigative or preventive management action should be triggered (assessment points). We illustrate this method for several case studies in national parks included in the Northern and Southern Colorado Plateau NPS I&M networks, where historical livestock grazing, climatic change, and invasive species are key agents of change. The approaches developed in these case studies are intended to enhance the design, effectiveness, and management-relevance of monitoring efforts in support of conservation management in dryland systems. They specifically enhance National Park Service (NPS) capacity for protecting park resources on the Colorado Plateau but have applicability to monitoring and conservation management of dryland ecosystems worldwide.
Sunday, September 22, 2013
Species of concern on the Colorado Plateau: Mosses & Lichens
Preface: nearly a decade ago I was asked to contribute to a book about species of concern in the Colorado Plateau ecoregion focusing on all taxa. I drafted up a section about mosses and lichens, focusing on gypsiferous species of biocrusts, which is a rare habitat. There are no federally listed mosses or lichens, not because they don't exist, but rather because the Endangered Species Act categorically excludes them.
I asked Roger Rosentreter (lichenologist), and Lloyd Stark (bryologist) for tips on other non-gypsiferous species I ought to mention.
Having heard nothing about the book in many years, I think I can assume the project is dead. In the meantime, I reckon its more useful here than on an old hard drive in an obsolete file format. I've supplemented it with links to images from the web, if they exist.
Regarding status, vulnerable means that it could conceivably be extirpated. For example rarity of habitat would render something vulnerable. At risk refers to a vulnerable species that is threatened by a stressor.
MOSSES AND LICHENS OF GYPSIFEROUS SOILS
I asked Roger Rosentreter (lichenologist), and Lloyd Stark (bryologist) for tips on other non-gypsiferous species I ought to mention.
Having heard nothing about the book in many years, I think I can assume the project is dead. In the meantime, I reckon its more useful here than on an old hard drive in an obsolete file format. I've supplemented it with links to images from the web, if they exist.
Regarding status, vulnerable means that it could conceivably be extirpated. For example rarity of habitat would render something vulnerable. At risk refers to a vulnerable species that is threatened by a stressor.
MOSSES AND LICHENS OF GYPSIFEROUS SOILS
NODULE CRACKED LICHEN
Status in region: At risk
Status elsewhere: At risk in the Americas
DESCRIPTION ~ Nodule cracked lichen was first
encountered in the Americas in the mid-1980's, and has been found to be locally
common species confined to the gypsiferous soils of the Colorado Plateau.
Although it is has a widespread distribution around the world, its preference
for a very rare habitat type in North America makes it a species of concern.
This lichen is composed of many scales of ~3-5 mm diameter with lobed margins.
Generally the appearance of the lichen is white due to a covering of oxalate
salts, but the thallus underneath is actually pale brown. It has black fruiting
bodies immersed in the thallus that lack any kind of rim around them. Colonies
are irregularly shaped and generally less than 5 cm in diameter.
Vulnerability Factors: Habitat specialist,
restricted range
NEVADA GYPSUM MOSS
Status in Region: At risk
Status in other regions: At risk
DESCRIPTION~ This rare moss was recently
described in 1995 as a result of morphologically well-developed collections
made during California bearpoppy studies. Nevada gypsum moss appears to be a
widely but sparsely distributed species of western North America,
almost exclusively on gypsiferous soils. It is distinguished by other mosses of
the same habitat by its lack of an awn (hair-like projection) on its leaf tips,
and its dark green to black leaves that tend to spiral around the stem near the
top. Its small stature (usually < 2mm tall) makes a handlens a must to
observe these features. Many desert mosses have skewed sex ratios, but to date
a male individual of this species has yet to be found making it one of the
champions.
Vulnerability Factors: Habitat specialist,
restricted range, possible low genetic diversity due to lack of sexual
reproduction
DESERT CRATER LICHEN
Status in region: Vulnerable {EDITORIAL NOTE: THIS SPECIES IS QUITE ABUNDANT, EVEN DOMINANT IN A RARE HABITAT TYPE}
Status elsewhere: Widespread and stable
DESCRIPTION ~ Desert crater lichen is found on
several continents but on the Colorado Plateau it is strongly
restricted to the rare gypsiferous soils where large white populations can be
visually impressive. This lichen forms rather large colonies often exceeding
5cm in diameter and is pure white. It tends to have a rugose, undulating
surface and has large (~ 2mm) black fruiting bodies which are bowl shaped and
sunken into the thallus surface like a crater. This species tends to have a
very clumped distribution, so if you find some you are likely to find a lot.
Vulnerability factors: habitat specialist,
restricted range
LARGELEAF GYPSUM LICHEN
Status in region: At risk
Status elsewhere: At risk globally
DESCRIPTION ~ Largeleaf gypsum lichen has been
confusing lichenologists since the 1920's, and was not discovered in the US
until 1990. Its unique fruiting body which grades into the vegetative thallus
afforded it a designation as a new genus solely representing a new family,
Gypsoplacaceae. It is a squamulose lichen with olive - tan squamules (scale-like
mini thalli) usually about 0.5 - 1 cm in diameter. The fruiting bodies, when
present, look like upraised brick red swellings on the squamules and may be
irregular to dome shaped. Although fairly large in the soil lichen world,
colonies are usually less than 5cm in diameter. This species is a rare one even within its specialized habitat which is also rare.
Vulnerability Factors: Low population density,
habitat specialist, restricted range.
GYPSUM-LOVING RIM LICHEN
Status in region: At risk
Status elsewhere: At risk globally
DESCRIPTION ~ This lichen was unknown to
science until collected in the San Rafael Swell in 1998, and has since been
observed at scattered locations around the Colorado Plateau. Gypsum-loving rim
lichen is chalky white to ashy gray and forms a tightly adhering crust on the
soil surface. Its thallus (vegetative portion) is divided into small partitions
called areoles. It bears black disk shaped fruiting bodies (1-2 mm dia.) with a
white margin that are flush with or sitting slightly atop the thallus. A
typical specimen is about 3 - 5 cm in diameter and irregularly shaped.
Vulnerability Factors: Habitat specialist,
restricted range.
Habitat: These species are strongly restricted
to arid and semi-arid sites with gypsiferous soils such as those derived from
gypsum-bearing portions of the Carmel
Formation, the Paradox Formation, and the Moenkopi Formation (most of
which occur at 5000 - 6500 ft). Such sites are found across southern Utah and
in southwestern Colorado. They occur as components of the conspicuously well
developed biological soil crusts generally found on these soils.
Threats and Concerns: On the Colorado Plateau,
these species are endemic to an inherently rare habitat type, and are uncommon
to rare within that habitat type even when undisturbed. Largeleaf gypsum lichen
is a rare species even within this special habitat type. Most of the gypsum
soils of the plateau are degraded to some extent by livestock activity and off
road vehicle use, and truly undisturbed examples may be lacking. As population
growth continues in the region, economical exploitation of the more pure gypsum
deposits may occur to satisfy demand for products such as drywall. Gypsum areas are particularly popular with users of dirt bikes and all-terrain vehicles.
Conservation: When planning road and trail
construction, gypsum areas should be avoided whenever possible. Enforcement of
off-road vehicle regulations should be prioritized in these areas. Plant cover
is poor on gypsum soils, therefore they offer relatively little forage value to
livestock. Grazing of these fragile habitats could and should be phased out
without creating major economic impacts. Because gypsiferous soils generally
occur in relatively small patches, a network of small fenced reserves could
potentially maintain the endemic biota.
Notes: Because several soil crust species and
some vascular plant species are rare gypsum endemics, and gypsum soils cover
very little area, it is practical and possible to conserve them all by
conserving the habitat in small reserves. We thank Dr. Larry St. Clair of BYU
for sharing his expertise on gypsiferous lichens, and Dr. Lloyd Stark of UNLV
for information pertaining to Didymodon nevadensis.
OTHER MOSSES AND LICHENS OF CONCERN
LITTLE FRINGE MOSS
Crossidium seriatum
Status in region: Unknown
Status elsewhere: At risk globally
DESCRIPTION ~ This little fringe moss is an
extremely rare western North American soil moss with a primarily hot desert
distribution. It has never been collected in the Colorado Plateau but likely
occurs in the more xeric portions, albeit very rarely. Although this species
cannot be separated from lookalikes in the field, perhaps its best identifying
characteristic is its extremely small size. A typical field specimen is
frequently less than 0.5 mm tall and although it does generally have a white
hairlike point on its leaf tips, it never appears as a white hairy cushion.
With the naked eye, individuals look like little black dots.
Vulnerability Factors: Low population density,
restricted range
Habitat: This moss occurs on sandy or
gypsiferous soils of aridlands. Dr. Lloyd Stark suggests that this species is
primarily centered around the gypsiferous soils near Lake Mead, thus its most
likely habitat on the Colorado Plateau includes the more xeric gypsiferous
substrates at the margins of the Colorado Plateau ecoregion such as those near St. George, Utah. Other possible localities include exposures of the Paradox formation in
Cataract Canyon and adjacent side canyons.
Threats and concerns: Soil disturbances of
various sorts are the most likely stressors: foot traffic, livestock grazing,
and off road vehicles.
Conservation: Initially, the best strategy is
simply to determine that the species does indeed occur on the Colorado Plateau
so that the habitat characteristics can be better defined and stressors better
identified. As a preemptive strategy, gypsiferous habit reserves should be
developed as described previously. Fortunately, the most likely localities for
this species happen to be in protected areas (Canyonlands National Park, and
Glen Canyon National Recreation Area), but they could potentially be impacted
by river users.
Entosthodon planoconvexus
Status in region: Vulnerable
Status elsewhere: Globally vulnerable
DESCRIPTION ~ This exceedingly rare moss is
known on the Colorado Plateau from only one location in Canyonlands (deposited by the author at the National Park Service Southeast Utah Group's herbarium in Moab, Utah), and is
known from only four other collections worldwide. Entosthodon planoconvexus
is a short moss with rather large yellowish green leaves that are spreading
when moist and shriveled when dry. Its sporophyte, when present, consists of an
upside-down pear-shaped capsule borne on a reddish stalk.
Vulnerability factors: Low population density
Habitat: Because of its rarity, the habitat of
this species is poorly defined although it tends to occur on dry soil at the
base of rocks. The Canyonlands specimen grew in a dry sandy soil layer over
rock and adjacent to a rock outcrop. It is an occasional associate of
liverworts of the genus Targionia.
Threats and Concerns: The main concerns with Entosthodon
planoconvexus are its naturally highly isolated small populations. Because
it tends to grow in at least partially protected habitats, the population is
likely stable, however stochastic events or disturbance could easily drive this
species locally extinct. Livestock and recreation impacts are the most likely
anthropogenic stressors of this species.
Conservation: It is difficult to recommend conservation
strategies for this species without knowing what potential stressors are.
Perhaps the best strategy is simply to determine where the species occurs so
that the habitat characteristics can be better defined and stressors
identified. Currently, bryophytes are not generally included in inventory and
monitoring projects.
Notes: Dr. Lloyd Stark of UNLV provided
helpful information on this species.
MINNESOTA ROCK LICORICE
Lichinella minnesotensis
Status in Region: Unknown
Status elsewhere: Possibly vulnerable in western North
America
DESCRIPTION~ This rock licorice lichen is apparently
a North American endemic with a primarily eastern distribution. There are some
rather disjunct collections from the midwest and west including a single
collection from near Kanab, Utah. This black lichen is composed of clumps of
ascending convoluted lobes. It is jelly like and semi-transparent when wet.
Colonies are generally only about 1 cm in diameter.
Vulnerability Factors: Isolated populations
Habitat: Minnesota rock licorice is found in
shallow fissures or crevices on rock outcrops. The sole Colorado Plateau
collection was from a limestone substrate of the Timpoweap member of the
Moenkopi formation in Grand Staircase-Escalante National Monument. It is difficult to characterize the habitat
characteristics of this species on the Colorado Plateau because only one
collection has been made.
Threats and Concerns: It is unknown whether
this species is threatened by anthropogenic forces, buts its rarity in the
region suggest it is vulnerable. Fortunately, its habitat type affords
considerable protection.
Conservation: It is difficult to recommend
conservation strategies for this species without knowing what potential
stressors are. Perhaps the best strategy is simply to determine where the
species occurs so that the habitat characteristics can be better defined and
stressors identified if they exist. Currently, lichens are not generally
included in inventory and monitoring projects.
Notes: Dr. Roger Rosentreter of the BLM
provided information on his Kanab-area collection of this species.
HAIRY MOUTH MOSS
Trichostonum sweetii
Status in region: Vulnerable
Status elsewhere: Globally vulnerable
DESCRIPTION ~ Hairy mouth moss is known from
only three collections on the Colorado Plateau (one a dubious identification)
and only a handful more from western North America where it is endemic. This is
a fairly large moss for arid regions (up to 2cm tall) and is an inhabitant of
shady crevices. It has large, narrow, bright green leaves (2-3 mm long) which
are spreading and widest just below the apex.
They may occur as small tufts or scattered individuals mixed with other
species.
Sunday, June 30, 2013
Major events in the life of a cyanobacterium: elucidating the "to-do list" for wet-up, normal activity, and dry-down
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Fig 1. Subtract out these grasses, and you might have a good analog for the first ecological communities to colonize the land (Beraldi et al. 2013, image: Bowker et al. 2002). |
Ever since about 3.5 (+?) billion years ago Earth has been the planet of the cyanobacteria (also correctly called blue-green bacteria and incorrectly called blue-green algae). We may have invented all kinds of interesting names for different parts of Earth's history (age of the fishes, age of the reptiles, etc.) in our animal-centric way, but in the background of all that there were the cyanobacteria quietly conducting the yin of global ecosystem function, primary production (decomposition being the yang). They "invented" oxygenic photosynthesis. They became engulfed by other organisms and were modified into the chloroplasts of plants and algae....so one could argue that cyanobacteria and modified cyanobacteria still conduct most of Earth's photosynthesis. These organisms drove mass extinctions, rusted the planet, and allowed a radiation of oxygen consuming organisms like humans by creating an oxygen rich atmosphere. They may have induced some glacial periods by locking up carbon dioxide. They were early colonizers of land, perhaps among the first (Beraldi-Campesi 2013; Fig.1). They engage in mutualistic relationships with plants and a variety of fungi. They are dominant phytoplankton in the oceans, and they are found in all terrestrial ecosystems from the hottest to the coldest, wettest to the driest. In short the Earth would be a fundamentally different planet without them.
In addition to being a pillar of the biosphere, they must have some very intriguing capabilities to exist essentially anywhere with light and at least occasional water. A case in point are the desert biocrusts, whose chief architect in the cooler deserts is the cyanobacterium Microcoleus vaginatus. They need light to photosynthesize, so they have to be near the soil surface....but think about what that implies: they must be able to tolerate their environment drying out, and they must be able to handle that sun, especially UV, exposure. This leads to two interesting abilities: desiccation tolerance and the ability to move in response to stimuli. Cyanobacteria inhabit the world's deserts because some of them are masters of desiccation tolerance: drying without dying. They pay a cost in terms of cellular damage when they dry down, but unlike you, me, your houseplants, or your dog, losing almost all of their water does not kill them. When dry, they power down completely, and simply sit there until they are moistened by liquid water and can restart their metabolism.
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It gets even more interesting. Microcoleus forms threads of cells called filaments. Many filaments bundle together inside a tube of polysaccharides (what a normal person might call slime) that they goop out into the environment (Fig. 2). The tubes often run from a few mm below the soil surface to the very surface. They can slide up and down these slime tubes! Why might they move up? If water is adequate, but light could be better (for example during a rainstorm), the very surface is the place to be. Because of their susceptibility to UV, they can also retreat down a bit if light intensity increases. They also retract back into the soil as it dries, because they don't "want" to desiccate on the surface only to site there for days, weeks or months degrading in the sun (Garcia-Pichel & Pringault 2000).
Because rain events and solar influx are not exactly scheduled events, one might hypothesize that all of these things ought to be regulated by gene expression triggered and set into motion by the wet-up and dry-down events themselves. Recently a team of researchers at the Lawrence Berkeley National Laboratory made the news when they tracked a wetup and dry down period in a biocrust, continually monitoring what genes turned on and off and therefore which processes where engaged. This gives us a glimpse for the first time of a desert cyanobacterium's prioritized to-do list when activated.
First, check out this video by the Berkeley team of a wet-up event below. You see bubbles of gas forming. This is probably mostly carbon dioxide at first giving way to mostly oxygen later, because respiration is engaged immediately to repair the damage sustained in the last dry-down and photosythesis takes a bit longer to ramp up. You'll see a visible greening as the filaments migrate up their slime tubes to the surface.
Next, check out their other video of a dry-down event. This video begins with a green surface because the filaments are lying there, then you can see the surface become less green because the filaments are retracting into their sheaths. The retracted filaments can now dry-down in peace below the surface without too much risk of major damage by the sun.
The Berkeley team found that there were essentially three clusters of genes that tended to be expressed at the same time. These could be correlated with three time periods: Early wet up, daily cycles, dry-down.
I'm no biochemist, so I'll just summarize a few highlights that I found intriguing, and maybe the authors will chime in in the comment box (ahem...!!). Upon wetting up & "waking" up, the cyanobacterium finds that it left on some genes important in the last dry-down. It shuts these off. Then it turns on the genes to move around nutrients, and start making chlorophyll and ATP....in other words "topping off the tank" to start photosynthesis and respiration. It also turns on genes to fix DNA damage, because that last dry-down did some oxidative damage. While wet the organism enters an alternating cycle of pulsed photosynthesis-linked gene expression triggered by the light environment, some of which shut down at night. Microcoleus is just going about its work week, punching the clock for the daily photosynthesis, and taking its payment in carbon. Then, eventually, the day of reckoning comes....its starting to dry down. we already know its not going to die, but this is a period of time where membranes are damaged and the cells are affected by oxidative damage. Luckily, this guy keeps an emergency box of genes just for such occasions. Microcoleus keeps photosynthesis and respiration running until the bitter end. It also starts expressing genes to defend against the coming reactive oxygen (pumping in Mn as enzyme cofactors!!!). It expresses genes to help maintain osmotic balance. Perhaps the coolest....it turns on genes to transport sugars & therefore energy. This may seem strange seeing as how the organisms is in the process of shutting down, but it could help speed things up when the organism wakes back up. Is this the desert cyanobacterial equivalent of laying out your clothes and shoes for the following day before going to bed?
Literature Cited
Beraldi-Campesi H. 2013. Early life on land and the first terrestrial ecosystems. Ecological Processes 2:1.
Bowker MA, Reed SC, Belnap J, Phillips S. 2002. Temporal variation in community composition, pigmentation, and Fv/Fm of desert cyanobacterial soil crusts. Microbial Ecology 43:13-25.
Garcia-Pichel F, Pringault O. 2001. Cyanobacteria track the water in desert soils. Nature 413: 380-381.
Rajeev L, Nunes da Rocha U, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfield CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. (2013). Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust The ISME Journal DOI: 10.1038/ismej.2013.83

Tuesday, April 23, 2013
Fort Hill site selection trip April 2013
We recently completed a recon trip to select study sites for our crust restoration studies. This one is Fort Hill Air Force Range, where we were hosted by Russ Lawrence and Aaron. Many thanks to our gracious hosts for a very successful trip. This is a beautiful cold desert area just to the west of the Great Salt Lake. Present were myself, Nichole Barger, Jayne Belnap, Mike Duniway, Ana Giraldo, and Anita Antoninka, who is away setting up experiments there as I write. I'd been to Salt Lake City a zillion times before, but due to the overcast sky this was the most beautiful plane landing. It was made all the more interesting since I was sitting next to two adult, male My Little Pony enthusiasts going to a Pony convention. I didn't know this phenomenon existed previously. They are called "bronies". Google it if you don't believe me. Oh yeah...the lake and snowcapped mountain combination was stunning. The base has that unique, lonely gray beauty that says "Great Basin!!!". It truly is the most underappreciated of North American deserts. The crusts did not disappoint either, we found lots of areas with fascinating crust flora, and all in all this seems to be a great place to work.
Due to low light and continuous hydration, these filamentous cyanobacteria have come to the soil surface. They will retreat when the soil drys or when the light increases. |
Psora decipiens - what a show-off |
Catapyrenium??? I'm stumped by this. I first thought it was a Collema, but after I picked it up I'm convinced its a phycolichen with very little squamules. Maybe its Catapyrenium congestum? |
On the ancient lake sediments, the biocrusts had polygonal cracks, and a Sharpei-skin surface structure. |
Ditto, closer. |
This is an invasive plant (bur buttercup) which loves to grow in the cracks between polygons whether or not there is crust present. |
Russ chatting with Mike, Anita, and Ana. |
Searching for a cheatgrass-free sandy soil. You can just make out that the salt flats in the far background are currently hosting a lake. |
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